Animal Genetics and Genomics Analysis

Transcriptome analysis

#####RNA-seq

Genome-wide association study

Permutation test for GWAS signals

The Sum-based method for GWAS Signal Enrichment analysis (SumGSE) is a tool to integrate genomic information of biological mechanisms with GWAS summary statistics for complex traits. The sum-based method uses signals of all markers within a pre-defined candidate feature. Briefly, we calculated the following summary statistics for candidate regions. The download and details of SumGSE method could be found here.

eQTL analysis

eQTL analysis and protocol and here

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